Recent database update activity
2025-01-17:- Campylobacter jejuni/coli: 22 isolates; 22 genomes; 595 alleles; 16 C. jejuni / C. coli cgMLST v1 profiles; 15 C. jejuni / C. coli cgMLST v2 profiles; 3 MLST profiles
- Candida tropicalis: 3 isolates; 1 allele; 3 MLST profiles
- Enterobacter cloacae: 1 isolate; 1 genome; 2 alleles; 1 MLST profile
- Enterococcus faecium: 28 MLST (Bezdíček et al.) profiles
- Escherichia spp.: 1 isolate; 4 alleles; 6 MLST (Achtman) profiles
- Haemophilus influenzae: 102 alleles; 13 cgMLST v1 profiles
- Helicobacter pylori: 12 alleles
- Neisseria spp.: 751 isolates; 395 alleles; 3 NG MAST v2.0 profiles; 24 N. gonorrhoeae cgMLST v1.0 profiles; 17 N. gonorrhoeae cgMLST v2 profiles
- Pasteurella multocida: 743 alleles
- Ribosomal MLST: 30,205 alleles; 4 rMLST profiles
- Salmonella spp.: 2 alleles; 3 MLST profiles
- Staphylococcus aureus: 8 alleles; 6 MLST profiles
- Streptococcus pneumoniae: 1,428 alleles; 9 MLST profiles
- Streptococcus suis: 7 isolates; 4 alleles; 6 MLST profiles
- Vibrio cholerae: 10 alleles; 1 MLST profile
- Borrelia spp.: 1 MLST profile
- Campylobacter jejuni/coli: 21 isolates; 20 genomes; 50 alleles; 1 MLST profile
- Citrobacter spp.: 1 isolate; 1 MLST profile
- Enterococcus faecium: 1 MLST (Bezdíček et al.) profile
- Escherichia spp.: 3 alleles; 5 MLST (Achtman) profiles
- Glaesserella parasuis: 1 isolate
- Haemophilus influenzae: 3 alleles
- Neisseria spp.: 1,545 isolates; 29 alleles; 1 NG MAST v2.0 profile; 63 N. gonorrhoeae cgMLST v1.0 profiles; 63 N. gonorrhoeae cgMLST v2 profiles; 100 N. meningitidis cgMLST v3 profiles
- Ribosomal MLST: 3 isolates; 30,231 alleles
- Salmonella spp.: 3 alleles; 3 MLST profiles
- Staphylococcus aureus: 15 isolates; 14 genomes; 408 alleles; 9 MLST profiles
- Streptococcus pneumoniae: 2 cgMLST profiles
- Vibrio parahaemolyticus: 19 isolates; 19 genomes; 4,684 alleles; 16 cgMLST profiles; 1 MLST profile
- Acinetobacter baumannii: 11 isolates; 11 MLST (Oxford) profiles
- Burkholderia cepacia complex: 3 alleles
- Citrobacter spp.: 1 allele
- Enterobacter cloacae: 1 allele
- Enterococcus faecium: 58 MLST (Bezdíček et al.) profiles
- Escherichia spp.: 1 allele; 1 MLST (Achtman) profile
- Haemophilus influenzae: 1 isolate; 5 alleles; 1 MLST profile
- Mycobacteria spp.: 2 alleles
- Neisseria spp.: 799 isolates; 4,437 alleles; 96 N. meningitidis cgMLST v3 profiles
- Pasteurella multocida: 52 cgMLST (draft) profiles
- Ribosomal MLST: 38,340 alleles
- Streptococcus pneumoniae: 2 isolates; 2 genomes; 20 alleles; 2 MLST profiles